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A-LevelBiologyNucleic acids and protein synthesis9700/22 · May/June 2023 · Q511 Marks

Nucleotide and nucleoside analogues are therapeutic drugs that have a similar structure to nucleotides or nucleosides of RNA and DNA. A nucleoside is composed of a nitrogenous organic base (base) and a pentose sugar.

  1. (a)The names of the bases present in RNA and DNA nucleotides can be abbreviated using a single letter. These are shown in Table 5.1. Complete Table. 5.1 by stating: • the name of each base • whether the base is a purine or pyrimidine • whether the base is present – only in an RNA molecule (write RNA in the table) – only in a DNA molecule (write DNA in the table) – in RNA and in DNA molecules (write the word both in the table). [Table 5.1][4]
  2. (b)(i)Carbovir triphosphate can be inserted into an elongating polynucleotide chain instead of a nucleotide. This interferes with the action of DNA polymerase during the synthesis of viral DNA. With reference to Fig. 5.1, explain whether carbovir triphosphate will replace a purine or a pyrimidine nucleotide in the elongating polynucleotide chain.[1]
  3. (b)(ii)With reference to Fig. 5.1 and the action of DNA polymerase, suggest why the conversion of abacavir to carbovir triphosphate increases the chance of the analogue being added to the viral polynucleotide chain.[2]
  4. (b)(iii)Suggest and explain how carbovir triphosphate interferes with the action of DNA polymerase and how this may prevent the synthesis of viral DNA.[4]

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Mark scheme

Marking points from the official mark scheme (May/June 2023). The mark or mark type is shown in brackets.

  1. [4] Table completion: A: Adenine, purine, both ; C: Cytosine, pyrimidine, both ; G: Guanine, purine, both ; T: Thymine, pyrimidine, DNA ; U: Uracil, pyrimidine, RNA ;
  2. [1] purine because it is a, double ring structure / has two rings ;
  3. [1] carbovir triphosphate is an activated nucleotide / has three phosphates / is phosphorylated ;
  4. [1] it is structurally similar to DNA nucleotides (A/G) and can act as a substrate for DNA polymerase ;
  5. [1] Carbovir triphosphate can be inserted into the growing DNA chain instead of a natural nucleotide ;
  6. [1] Its similar shape allows it to bind to the active site of DNA polymerase / acts as a competitive inhibitor ;
  7. [1] Once inserted, it prevents the DNA polymerase from adding further nucleotides to the chain, thus stopping elongation ;
  8. [1] It may cause a change in the shape/tertiary structure of DNA polymerase / DNA polymerase may become detached from the template strand ;
  9. [1] It may prevent the formation of phosphodiester bonds ;
  10. [1] It may introduce a mutation / changes the DNA formed / changes the nucleotide sequence ;
  11. [1] The analogue may be too similar to a natural nucleotide to be recognized and repaired by proofreading mechanisms, leading to errors ;

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About this question

Topic
Nucleic acids and protein synthesis, A-Level Biology (syllabus 9700). Structured question, 11 marks.
Source
A-Level Biology, May/June 2023 Paper 2 Variant 2, question 5.

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